NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GZRSKLJ01DX69P

Scaffold GZRSKLJ01DX69P


Overview

Basic Information
Taxon OID2170459024 Open in IMG/M
Scaffold IDGZRSKLJ01DX69P Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - FD1 (NaCl 300g/L 5ml)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)516
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003995Metagenome / Metatranscriptome458Y
F018679Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
FD1_03781100F018679N/AVLADSMKSAIKMAWEHGGADFQSRFDKSTAQAQEMKEGALRVL
FD1_03781110F003995AGGMTREEIEQKMDELTDKYVETRNQKIIDELYKLICELDELQKLEKQMKN

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