NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPBTN7E02I5QKI

Scaffold GPBTN7E02I5QKI


Overview

Basic Information
Taxon OID2189573000 Open in IMG/M
Scaffold IDGPBTN7E02I5QKI Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)524
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005268Metagenome / Metatranscriptome406Y
F072127Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
N55_04653870F005268GAGGMSRSDEQTEAQQVWRALSEAGLVEIPLDEFAEKIREVKHIVVVRLCELLDLDAGIKERESAASSLGTLKGLELKVL
N55_04653880F072127N/AYLRTDGWIPENRISGCPHASGSGAKVDEVSDNERGACEERLLAMAEARMDPRKRDQPFWAELNQYLAYTYLRFKRTGCNPQDTGR

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