NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GZIGXIF02F0RFS

Scaffold GZIGXIF02F0RFS


Overview

Basic Information
Taxon OID2189573002 Open in IMG/M
Scaffold IDGZIGXIF02F0RFS Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)523
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019351Metagenome / Metatranscriptome230Y

Sequences

Protein IDFamilyRBSSequence
FE1_09493930F019351N/ALDFRGVIFWSYITLVAVHVTLSSIAVPLFPKAGALRIHLGSMVLSVILLVTGVAVYGKVRRLAMSNDHRAFMESRRPLMNVIELKEWSYFPDESHPTEIRVSVVVHQSGRFAGNVIGEQTDSSGSSTTMFESTNGPESQRQVRSGEAFTYPFPLKFLTAGRTDDVRVTLYLFK
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