NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GZGWRS401AVDUK

Scaffold GZGWRS401AVDUK


Overview

Basic Information
Taxon OID2189573004 Open in IMG/M
Scaffold IDGZGWRS401AVDUK Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)555
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017534Metagenome / Metatranscriptome240N
F025077Metagenome / Metatranscriptome203N

Sequences

Protein IDFamilyRBSSequence
FG2_01496390F017534N/ANLQLLKTLITTMSDEDLIKQAYEEFIKNLFKNFYEAYTASTNPTHEKTAEQIFQNAVKAARNARDRAVAILPK
FG2_01496400F025077N/AMDINNTHYNVEFYAGDSTRVAHYENMANPIMLPRVGDRVHFHNHDITLQITRVVHEFVDHFADEPRRFSLSHVVKVYGDKVS

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