NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GZGWRS402FOP2L

Scaffold GZGWRS402FOP2L


Overview

Basic Information
Taxon OID2189573004 Open in IMG/M
Scaffold IDGZGWRS402FOP2L Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)532
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019873Metagenome / Metatranscriptome227Y
F060377Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
FG2_10080440F060377N/AFLSFVVVGVTPLRAREFDAATFRSFDEAATVRGFF
FG2_10080460F019873N/AYVPQTRLSEMKAKQSQSNSKRAPWRIFRRSSRRHDPMLVLNMTLFNFTDGWNRAFFREQYARFSV

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