NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GZGWRS402GBROI

Scaffold GZGWRS402GBROI


Overview

Basic Information
Taxon OID2189573004 Open in IMG/M
Scaffold IDGZGWRS402GBROI Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)502
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034869Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
FG2_08590010F034869N/AIDARKVTFLSTGGQASRATAVEAGTTMGSSFNRYYMLQLKRKGFRDLARLERPDYPFPPSIFVVRKDTLQSRRKGLKSMLLAMMEASERQKTNKELSLQLIRKNLRLQNPEVVEAAYEDGVTISYPYFTEQQFQISLELLGKSMGQSVSLNYKQVVDHSLLDEI
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