NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GS312G0146KB_1113212470203

Scaffold GS312G0146KB_1113212470203


Overview

Basic Information
Taxon OID2189573027 Open in IMG/M
Scaffold IDGS312G0146KB_1113212470203 Open in IMG/M
Source Dataset NameEstuarine microbial communities from Columbia River, sample from CR-7km from mouth, GS312-FOS-0p8-CR7-chlmax
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of South Carolina
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)832
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameColumbia River Transect 7 km from mouth (CR7)
CoordinatesLat. (o)46.167Long. (o)-124.158Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043079Metagenome157N
F083239Metagenome113N

Sequences

Protein IDFamilyRBSSequence
GS312G0146KB_00144970F083239N/AMETMTMTENYLDLTIDEVYDVITSINIWPQTFDKSKKIAFMNHMINYFENKEEYEKCAKLQRLIHDMEDSE
GS312G0146KB_00144980F043079AGGMTWKIVSKITDTYDFQDGAQNSYIVYVQDDTGVNIAAKEAYGITDRTKVTKELINEYQEYGIVKIEHQDH

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