NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2199788422

Scaffold 2199788422


Overview

Basic Information
Taxon OID2199352004 Open in IMG/M
Scaffold ID2199788422 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2223
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003750Metagenome / Metatranscriptome470Y
F008494Metagenome / Metatranscriptome332N
F009750Metagenome313Y
F010398Metagenome304Y
F043399Metagenome156N

Sequences

Protein IDFamilyRBSSequence
2199948112F009750GAGMKEIVTAIYQNGVFKDNKILKPHLTDRIGIRMKFPEGAECILWTNGKKYYAVCEAFGTIFTINIPRNIGDDIWDKFKTHYEGNYFYQPF
2199948113F008494AGGAGMTKTEVITMFMNAVGQYTTAIDKTADSNINYKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKVSEKTQDLIIAKREAEYQLETARANESRIKAEVDQIKYIIRALEVKEEA
2199948114F010398AGGAMEISIQGIAKVNYELVIDEDVFNDACEECGLDPANFKKFTKDQWDELNPHLVQAVVDNESDIDYTEIHVESSVFADTLTIDDSDNMTTVYYDKNRKTDSFEIL
2199948115F043399N/AMFLIDYPIVIWTIVKKNNNYILLDSSGVEVFRRKENRKKEIYQYCEDNGIDFQEEF
2199948116F003750GAGMQVAIYSGGIVAFWQITKHMPKALYTLLECITVMTFSVLLLTPFSMIIEYILGGNIDTTMMFVGCLATVSLLSTMWMVMVQSSRELQGKKQYQYVVL
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