NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2199816734

Scaffold 2199816734


Overview

Basic Information
Taxon OID2199352004 Open in IMG/M
Scaffold ID2199816734 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6242
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (95.65%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Associated Families11

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001562Metagenome / Metatranscriptome670Y
F002245Metagenome / Metatranscriptome578Y
F002598Metagenome / Metatranscriptome544Y
F004051Metagenome / Metatranscriptome455Y
F004840Metagenome / Metatranscriptome421Y
F007263Metagenome / Metatranscriptome354Y
F015730Metagenome / Metatranscriptome252Y
F020168Metagenome / Metatranscriptome225Y
F029434Metagenome / Metatranscriptome188Y
F050376Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
2199990784F004051GAGGMTINDKLYQVGDLFTTLKSKKTGVIKEIHPQASGSVRVLLEMPSKETRWTSVSAKTLLGA
2199990786F002245AGGMSNLMKVPHTVVFEAIIDLDKIPASLLPALIALDKSSIEQMCKEATLHALGMSNVLPLANDNNTWAEVTIKGDN
2199990787F020168GAGMYDVIGSVIGIILIAFLCSPLVLAVYMWRGAKIDSDNDGKDDVPYRWEKQ
2199990791F004840AGGAMYKITCAYDSNAPHWSAEYESEFGAWENFFKFTDWGFADEYSTVNIYTPTGKCYTKVFYRTGMVSVK
2199990793F007263AGGMITKDYIDQTEFYLVKDEQHFCCDESQFRYVCKAHGEQMDCYFCGFDYDQDCEEQH
2199990794F002598AGAAGGMATKLYTIESLLVGQNYRSRNRHFAGEIVSAKPRPEIWYGDKTEAFLIEIRTGGLRNKFATVAVKVGE
2199990795F001562GAGGMKSQFEKDLEIKESFIDFLNDLYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAELEEE
2199990796F029434AGGMKRYTFGVWLDIDAEDEEMAISLFDSVVKNAFVSDSYCFEWKEVADEIAV
2199990797F000447AGGAGGMGYVEIFRIDNEGAGWVDLSEATPDELLDLEIGLFQEGAL
2199990798F050376AGGMTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD
2199990803F015730AGGAGMLTQKTLDAIVYEYQHGGVKSNHPELTTYERKALLKHLFSLPTYCACCVR

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