Basic Information | |
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Taxon OID | 2199352004 Open in IMG/M |
Scaffold ID | 2199872299 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4033 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, WI | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001561 | Metagenome / Metatranscriptome | 670 | Y |
F009750 | Metagenome | 313 | Y |
F013084 | Metagenome | 274 | Y |
F018927 | Metagenome | 232 | Y |
F024557 | Metagenome | 205 | Y |
F043399 | Metagenome | 156 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
2200057117 | F013084 | GAG | MEETKNTVLHRGHNVKNWLVLGNDCYALECADCKMTCMIKEKPLPNEIKASGEALAVNCVKPVKEKKLRKK |
2200057118 | F018927 | AGG | MNKHIEITRHLTVDGTSTYYVVEKSKNSSSIIWNGTCKQAAYQVAYRNARKENTPLYDTLYKAEVDRNGVKHIIPFGNELLEVN |
2200057119 | F043399 | N/A | MLLDDYPIVIWTIVKKNNNYILLDSCGIEVFRRKENRKKEIYQYCEDNGIDVQEEF |
2200057123 | F009750 | GAG | MKEIITAIYQNGKFKDNKILKPHLTDRIGIRMTFPEGAECILWTNGKKYYAVCEAFGTIFTVSIPRNLGDDIWDRFKTEFEGNYSYNSF |
2200057125 | F001561 | GGAG | MQTREQKIKLLNKTIETLWHGVSDTKEGDYPKIINLYKEVLKLDAKNRDAWENMIWLMWSMAVNKKDTSWLFEAEKFAKRYLSLNSKGYRAYEYLGQFYRIMYVDLRLAVRYYESAIRWKDAPKSTHHSLISVCEKSGDKIRAIGYCKMTLARFPNDPYTKSKLEVLTKL |
2200057126 | F024557 | N/A | SQVWIYFSKTGTGYELSGSDIISGIDAFINMDGTYLVEYSYSDLMNDMHFFIYEWDNSQKKRRTVYESYQKELVLMGMVKNIDKLPLNVQQKILTMYVSDAEELELEKNANS |
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