Basic Information | |
---|---|
Taxon OID | 2199352004 Open in IMG/M |
Scaffold ID | 2199906775 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3037 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Mendota, Madison, WI | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013514 | Metagenome / Metatranscriptome | 270 | Y |
F016800 | Metagenome / Metatranscriptome | 244 | Y |
F019061 | Metagenome / Metatranscriptome | 232 | Y |
F047649 | Metagenome / Metatranscriptome | 149 | N |
F057309 | Metagenome / Metatranscriptome | 136 | Y |
F072285 | Metagenome / Metatranscriptome | 121 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
2200087032 | F016800 | AGGA | MLDAFTDYPIPSYGDVEGKQAPIRKATILTYDRNKYCDVLVYQVDEDGDLRGTVVNFKQFYLYKNEARLDDGIPFTYAELETLPWTKVSYPHSI |
2200087033 | F013514 | GAGG | MSINLEELQKFLDDNNITFEEYMRANMITDEERKYIDKIWVDAIYKNLGEDT |
2200087034 | F057309 | GGA | MTNPLIDKYFELYPEKKEKPKFPRIEDYKGEETFADELKKLRDTSTIPVSKIKSYDLDDLKTSFQQVAEQLQNDEAQVISMNMEFGDHMNKMTFEVYVYKP |
2200087035 | F047649 | AGGTGG | MRYYETRTYEHQKDFDEKNRAQKYLTEYRDKYLHLRKEVRNLVREQNLTITPDFAKLIGM |
2200087036 | F072285 | GGA | MKYPQSVNKSIFIREVYEDTYETPYDYIVDSMIWENRVDELHTIWCKGKTPKVDEK |
2200087038 | F019061 | N/A | MTEPTDTEILEFLLNQFQAHNLKMNGESDWVFMNTGFPMSRAKGRTARDAVINAMRAK |
⦗Top⦘ |