NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2199906775

Scaffold 2199906775


Overview

Basic Information
Taxon OID2199352004 Open in IMG/M
Scaffold ID2199906775 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3037
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013514Metagenome / Metatranscriptome270Y
F016800Metagenome / Metatranscriptome244Y
F019061Metagenome / Metatranscriptome232Y
F047649Metagenome / Metatranscriptome149N
F057309Metagenome / Metatranscriptome136Y
F072285Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
2200087032F016800AGGAMLDAFTDYPIPSYGDVEGKQAPIRKATILTYDRNKYCDVLVYQVDEDGDLRGTVVNFKQFYLYKNEARLDDGIPFTYAELETLPWTKVSYPHSI
2200087033F013514GAGGMSINLEELQKFLDDNNITFEEYMRANMITDEERKYIDKIWVDAIYKNLGEDT
2200087034F057309GGAMTNPLIDKYFELYPEKKEKPKFPRIEDYKGEETFADELKKLRDTSTIPVSKIKSYDLDDLKTSFQQVAEQLQNDEAQVISMNMEFGDHMNKMTFEVYVYKP
2200087035F047649AGGTGGMRYYETRTYEHQKDFDEKNRAQKYLTEYRDKYLHLRKEVRNLVREQNLTITPDFAKLIGM
2200087036F072285GGAMKYPQSVNKSIFIREVYEDTYETPYDYIVDSMIWENRVDELHTIWCKGKTPKVDEK
2200087038F019061N/AMTEPTDTEILEFLLNQFQAHNLKMNGESDWVFMNTGFPMSRAKGRTARDAVINAMRAK
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