Basic Information | |
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Taxon OID | 2199352004 Open in IMG/M |
Scaffold ID | 2199907308 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2990 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, WI | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002398 | Metagenome / Metatranscriptome | 563 | Y |
F002406 | Metagenome | 562 | Y |
F009266 | Metagenome / Metatranscriptome | 320 | Y |
F027179 | Metagenome | 195 | Y |
F060914 | Metagenome | 132 | N |
F101144 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
2200087929 | F101144 | N/A | MEAKTFTFYMTERHGYVETTRAYLRKLKISKLISPYSRQSGNKVYIEEDGDLALFTKRHTVAGIEITLKQEEKEQRFFDNMWNFKDDECQDQQFDGFKSEWSLSQRVNFVKPDSLKHLRNSTFETKDGKCLKIVPTFYLDGKPLNESQMKKLGIELTTITCGELDYEYEV |
2200087930 | F009266 | N/A | MTPKEIKILDKEIQYLCEQQDRVKAIREYTNINPGYNFLKEVETIESLYKSVLENRKHDKSMYFSCATSGWYVVYLRDKKTYKKGEKFRIKIFHTFVWTDNLD |
2200087931 | F002398 | GGA | MIXLISIFLLTXVDXIKNFVSLKTYISENAKAHCYVYFINEDXPDFPRVNXIEKSKFDFFAYLDTIGIEHSKVGSYYFFQRKPK |
2200087932 | F060914 | N/A | VQQKEKQLKRLIKVRSDISSSIYPIQLYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNARIIQDXNELKAQGIL |
2200087933 | F027179 | GAGG | MKLIYMADGLFLYEKENSYVVMDQNDNVLKELKTSTSCARYILKTLQSRRAAEREAIEEINKSKV |
2200087934 | F002406 | N/A | MENIKWIRAMSDRLRDTLSSEYDDETKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDKE |
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