NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2199907308

Scaffold 2199907308


Overview

Basic Information
Taxon OID2199352004 Open in IMG/M
Scaffold ID2199907308 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2990
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F002406Metagenome562Y
F009266Metagenome / Metatranscriptome320Y
F027179Metagenome195Y
F060914Metagenome132N
F101144Metagenome102N

Sequences

Protein IDFamilyRBSSequence
2200087929F101144N/AMEAKTFTFYMTERHGYVETTRAYLRKLKISKLISPYSRQSGNKVYIEEDGDLALFTKRHTVAGIEITLKQEEKEQRFFDNMWNFKDDECQDQQFDGFKSEWSLSQRVNFVKPDSLKHLRNSTFETKDGKCLKIVPTFYLDGKPLNESQMKKLGIELTTITCGELDYEYEV
2200087930F009266N/AMTPKEIKILDKEIQYLCEQQDRVKAIREYTNINPGYNFLKEVETIESLYKSVLENRKHDKSMYFSCATSGWYVVYLRDKKTYKKGEKFRIKIFHTFVWTDNLD
2200087931F002398GGAMIXLISIFLLTXVDXIKNFVSLKTYISENAKAHCYVYFINEDXPDFPRVNXIEKSKFDFFAYLDTIGIEHSKVGSYYFFQRKPK
2200087932F060914N/AVQQKEKQLKRLIKVRSDISSSIYPIQLYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNARIIQDXNELKAQGIL
2200087933F027179GAGGMKLIYMADGLFLYEKENSYVVMDQNDNVLKELKTSTSCARYILKTLQSRRAAEREAIEEINKSKV
2200087934F002406N/AMENIKWIRAMSDRLRDTLSSEYDDETKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDKE

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