NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2199907866

Scaffold 2199907866


Overview

Basic Information
Taxon OID2199352004 Open in IMG/M
Scaffold ID2199907866 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2914
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015472Metagenome254Y
F033432Metagenome177Y
F074878Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
2200088925F033432AGGAMSNYRKKFLSLWSAIMEEEKWHKVNSPACKPSCKGWNAWAPLCECGENYCTFKPSGNLEDMQIVIISIPLDF
2200088926F015472N/AMVVAGWRQVLFTERSRKVMAHGYLNNGGTRWVTDNKIQVTGEVNGKSYDKMRQPMFWEQLGNFAVCYVRVGRTVFCGFTNDNDGTIQLKLEKCRIVR
2200088927F074878N/AMNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEEYAHKYGVEWLLQDGDKFYSQKGLVK
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