NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold 2199929823

Scaffold 2199929823


Overview

Basic Information
Taxon OID2199352005 Open in IMG/M
Scaffold ID2199929823 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1505
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008359Metagenome / Metatranscriptome334Y
F053296Metagenome / Metatranscriptome141N
F080039Metagenome115N

Sequences

Protein IDFamilyRBSSequence
2200125255F080039N/AMNKRKLDHNLVSEKIGYDYANKKMMIRVYDSLHYIMEMSTQKPSWVAIVKHMLTMDGVDLNSVAVNGYYSTIRKNLKDIKVIKYNGRKGLEKGDNWNRFFGDEDWSWFITNTNSGGYGTIVK
2200125258F008359N/AMKSKLNTKSLYEIKKVKRVMRMKSEGFEPTSFEVYKVSGPNKFRKYFVSRKDAKSFIDGYTDTKMTIGIVKNIMNEIKMK
2200125259F053296N/AIVAVRNNTELKKQMKFFGMLKKESATIKQIISQYPIKLGKVEKRFLAECKRELKSVLKLNNKQLEIVLG

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.