NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold deeps__Contig_166567

Scaffold deeps__Contig_166567


Overview

Basic Information
Taxon OID2199352024 Open in IMG/M
Scaffold IDdeeps__Contig_166567 Open in IMG/M
Source Dataset NameBare-fallow DEEP SOIL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterArgonne National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1091
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rothamsted, Uk, For Project Deep Soil

Source Dataset Sampling Location
Location NameUnited Kingdom Rothamsted
CoordinatesLat. (o)56.03Long. (o)-2.82Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016976Metagenome / Metatranscriptome243Y
F073948Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
deeps_03073470F073948GGAGGMPMPTVAIDVPSAQVLADQASIISELQFVMDCCKRLLADLAKPEEERDR
deeps_03073480F016976GGAMPLALWSSAVLAYGRCFSKGKRFALSNDDVKNLPLHGAVMKFHQWILEERDKLAARAANPAEGAKVGAALSPPEQKDRRVEGIVIFASSHEVVDDVGVRQLGGLASELAKQTAEKAQEQQDVVLKDAQQLDLDSLYQQEPIGTWPPGEPEESAADGD

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