Scaffold deeps__Contig_200709

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold deeps__Contig_200709

Scaffold deeps__Contig_200709

Overview

Basic Information
Taxon OID	2199352024 Open in IMG/M
Scaffold ID	deeps__Contig_200709 Open in IMG/M
Source Dataset Name	Bare-fallow DEEP SOIL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Argonne National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1267
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rothamsted, Uk, For Project Deep Soil

Source Dataset Sampling Location
Location Name	United Kingdom Rothamsted
Coordinates	Lat. (^o)	56.03	Long. (^o)	-2.82	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015136	Metagenome / Metatranscriptome	257	Y
F016618	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
deeps_03853280	F015136	GGAG	MNKSIHMVRVASLFAAVVLFSFYLFAKDKPKDTVSLRGSIMDSQCAFNVHSNARSHEWMTTRGVQGATDEESCTQHCVKDMGGSYVLVVKKDVYKLDDQVKAEQFAGKKVKINGTLDAGAHTLHIFDMEEDK
deeps_03853290	F016618	N/A	MEDFSDRIESITQELRALHQQLHWPIFQNADSGDQERILNNLLNAGLGHTLKKAVDLLSQFLWCYIESAAAGMNAEGVDYAQQGQRLAQVTEMLRLLHHSACPLRESLASIEQATITVTRNAEIAGMRRQVSIEKTA

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