NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold deeps_contig11543.7734

Scaffold deeps_contig11543.7734


Overview

Basic Information
Taxon OID2199352024 Open in IMG/M
Scaffold IDdeeps_contig11543.7734 Open in IMG/M
Source Dataset NameBare-fallow DEEP SOIL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterArgonne National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8139
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rothamsted, Uk, For Project Deep Soil

Source Dataset Sampling Location
Location NameUnited Kingdom Rothamsted
CoordinatesLat. (o)56.03Long. (o)-2.82Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001203Metagenome / Metatranscriptome748Y
F002023Metagenome / Metatranscriptome603Y

Sequences

Protein IDFamilyRBSSequence
deeps_01277110F001203AGGMVSTENWAEERDRLVRLLAGIESGTITHVDEEDLRQLQATNPQNIAALKERLAELNSRLGRTDEE
deeps_01277150F002023GAGMLVRGKVTVMIQSVLLVIATALLTWFIMRWARPTRNDPKHVSPQEREAERAKDIGTQLDSAKDRASVAEIERNRLALAKAVKAALWVTEARLNLAVPELLQMAQLWVGKSKVRGEKWTAPKGVTDIEGLDDAEAPWASWTFDDHRWGIEGLWRPSALPEEIEGDVGTFKVLFDRQLVLDMTISNKDPQLLWVDALTVGPWVSDLLAFAGARSSDAKARSSARSARKNQDRADKIHWS
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