Scaffold deeps_contig29716.19071

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold deeps_contig29716.19071

Scaffold deeps_contig29716.19071

Overview

Basic Information
Taxon OID	2199352024 Open in IMG/M
Scaffold ID	deeps_contig29716.19071 Open in IMG/M
Source Dataset Name	Bare-fallow DEEP SOIL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Argonne National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6664
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (54.55%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rothamsted, Uk, For Project Deep Soil

Source Dataset Sampling Location
Location Name	United Kingdom Rothamsted
Coordinates	Lat. (^o)	56.03	Long. (^o)	-2.82	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000688	Metagenome / Metatranscriptome	937	Y
F001371	Metagenome / Metatranscriptome	712	Y

Sequences

Protein ID	Family	RBS	Sequence
deeps_03621850	F000688	N/A	MTHFPLSDSQQRSPRVKLNGSVTAAIMADGGHRARAKLQSISVTGGLLQLARQLTAGDFVEIAFQTRAGAICGMAEMLQPFNVQQKACMQPFRFIALDDDDHRKLRMALDSALDHTFREFISDQAQAPPNF
deeps_03621880	F001371	N/A	MTPKTAGNIKKAAAADLEVGLICADRDGNRVRVDRVERDEHGVGNLSYHFLNDELRVQEGVQDRTIEEFLAEGWVVAAPGSSL

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