Scaffold deeps_contig76661.46110

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold deeps_contig76661.46110

Scaffold deeps_contig76661.46110

Overview

Basic Information
Taxon OID	2199352024 Open in IMG/M
Scaffold ID	deeps_contig76661.46110 Open in IMG/M
Source Dataset Name	Bare-fallow DEEP SOIL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Argonne National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1172
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rothamsted, Uk, For Project Deep Soil

Source Dataset Sampling Location
Location Name	United Kingdom Rothamsted
Coordinates	Lat. (^o)	56.03	Long. (^o)	-2.82	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003566	Metagenome / Metatranscriptome	479	Y
F032380	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
deeps_00552450	F003566	AGGA	MSAQGSAPRATLDLKVRVWGMGANGQPFFQNAMAQNVSMTGACLYGIEPELKVGDVIGVQYEGRKARCKVVWVVDAGALKKTQVGVQLVADQECPWTAALPVDMKAEERTQQRQDNRRKYARHKVSFPLELRANASILHCA
deeps_00552460	F032380	GGA	MPLALATALRVDLWIGEERLSPSAVVRTRDPGVGMGIEFTGMTEEMKKRFQAHLDQLDPGPSLGPKDAAKDGEQL

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