NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold deeps_contig87098.51800

Scaffold deeps_contig87098.51800


Overview

Basic Information
Taxon OID2199352024 Open in IMG/M
Scaffold IDdeeps_contig87098.51800 Open in IMG/M
Source Dataset NameBare-fallow DEEP SOIL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterArgonne National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1722
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rothamsted, Uk, For Project Deep Soil

Source Dataset Sampling Location
Location NameUnited Kingdom Rothamsted
CoordinatesLat. (o)56.03Long. (o)-2.82Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001734Metagenome / Metatranscriptome644Y
F008261Metagenome / Metatranscriptome336Y

Sequences

Protein IDFamilyRBSSequence
deeps_00690740F001734AGGMRPTFPGWLIVALCALTAVLAHPAALQAQDEQPSLGDLARDMRRSKAQTPPHRAPDPLHPIIDNDNLSEVMEDAKRARPEKPNKTVFSIDGASNTVKVSSPDVTCSLSFDARASALLVKPVLVEDLPLAELVKIDGPGSIQEENLQLEVFNGTEWDLREITIGLTLERKPGEKAGLASRPRVIPAAEGIAMPTVERHSDVTLLYHLKAQAKPFSKTAFRENIGITPGPDEDWRWSIVEAKGIRPTQVPASFDTLREEPLFAMPSLLQPGTSPSPSTPMESSSDKVPFAPSAPNAAKEPVKEKPTTSNSVTPPESPRN
deeps_00690750F008261GGAGMKIWHVAYAALGIAVARWVFKRQPMTITDQVARFRTSGLL
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