NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold deepsgr__Contig_15086

Scaffold deepsgr__Contig_15086


Overview

Basic Information
Taxon OID2199352025 Open in IMG/M
Scaffold IDdeepsgr__Contig_15086 Open in IMG/M
Source Dataset NameSoil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterArgonne National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3999
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rothamsted, Uk, For Project Deep Soil

Source Dataset Sampling Location
Location NameUnited Kingdom Rothamsted
CoordinatesLat. (o)56.03Long. (o)-2.82Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000466Metagenome / Metatranscriptome1105Y
F061209Metagenome132N

Sequences

Protein IDFamilyRBSSequence
deepsgr_02482140F061209GGAMKALFLSALLVAGFVPGATAQQTTGPIAITNTVNGIPITVSATSWVTTSSAGNEPRIQARIFADLIDLQRKFASVVDSFKLPATSCVNRASGHQNQVVSFKAGALVPVDDRLVMSVRGDVDVSSCIAGPAKSAIQWRKKKVWFLKIKVPERYTWRNMKERKDGAQSFSGSLPIQLVKKDGANVALKIAEADIKMEGQESSAKNANMNLAKAHINQKAYNTLQSAIDPAKLKMALPKEFQKLNMAVVSTRFRSYGGHAIAEINLSAENPSYTQ
deepsgr_02482190F000466N/AQGVVKHDWVPTGRIDFATRLNGSAEDAEQPSEFKLLVEERRIVESIAGNENLEIQWRLATLKEAKAVVTQYHKYLSENALIKSIFDDTIALPPPKKNSANSSA
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