Scaffold deepsgr__Contig_42683

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold deepsgr__Contig_42683

Scaffold deepsgr__Contig_42683

Overview

Basic Information
Taxon OID	2199352025 Open in IMG/M
Scaffold ID	deepsgr__Contig_42683 Open in IMG/M
Source Dataset Name	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Argonne National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1620
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. FHR47	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rothamsted, Uk, For Project Deep Soil

Source Dataset Sampling Location
Location Name	United Kingdom Rothamsted
Coordinates	Lat. (^o)	56.03	Long. (^o)	-2.82	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018030	Metagenome / Metatranscriptome	237	N
F020741	Metagenome / Metatranscriptome	222	N
F058291	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
deepsgr_00385960	F018030	N/A	MDAATSLDDAVRKAQDIMWGALSPGSARAAAVVKLRDLLWSAKMTRALAISSDNCPAFALRQSRIALADASAWPDKTLSVLWTILDDPALNAALGIPQATDAARRNHPCP
deepsgr_00385970	F020741	GAG	MARCGSSFLGALLLVLIAQPATAQIGAFSQSPDREVGNNSRARGAQVECGPIGCRPLPPGCKQVRLGGRWLDNNGLRVVCDPKRN
deepsgr_00385980	F058291	AGGAG	MLKTSKFILPYEPGYTGHWEAEKRRKETREWLRQRERDIAAPSIVPETPEKDAALTSKRS

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.