NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2206932788

Scaffold 2206932788


Overview

Basic Information
Taxon OID2199352033 Open in IMG/M
Scaffold ID2206932788 Open in IMG/M
Source Dataset NameCave microbial community (Wet rock wall)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterArizona Genomics Institute
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)545
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Speleothem And Rock Wall Surfaces → Speleothem And Rock Wall Surfaces Microbial Communities From Kartchner Caverns, Benson, Arizona, Usa

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084767Metagenome112N

Sequences

Protein IDFamilyRBSSequence
2208696868F084767AGGAGMQAETASWLNKSRGSFGAAQSRFNDISSMDVNGAGALFMSAEYAMKAVIVEHYGFLPSSFETHHRIVNLSHLIGLWWQLPPDLRAYLADIAPLDPNVLYPPRPRPRPPATN

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