Scaffold 2207182968

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold 2207182968

Scaffold 2207182968

Overview

Basic Information
Taxon OID	2199352036 Open in IMG/M
Scaffold ID	2207182968 Open in IMG/M
Source Dataset Name	Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - Oil_sample_6
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Alabama State University
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	559
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Marine → Marine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa

Source Dataset Sampling Location
Location Name	USA: Alabama
Coordinates	Lat. (^o)	30.15	Long. (^o)	-88.446	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050774	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
2209054847	F050774	N/A	MKIDLKMLTPILITALIGVIGWLFNTIEELQIAHSSMMTQLRILEKDLDMQESLFSELLFKISG

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