NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DRAFT_Contig_30295

Scaffold DRAFT_Contig_30295


Overview

Basic Information
Taxon OID2209111013 Open in IMG/M
Scaffold IDDRAFT_Contig_30295 Open in IMG/M
Source Dataset NameSubtropical soil microbial communities from Bundaberg Australia-rainforest
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterAustralian Genome Research Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)528
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Subtropical Soil → Subtropical Soil Microbial Communities From Bundaberg Australia

Source Dataset Sampling Location
Location NameAustrailia: Bundaberg, Queensland
CoordinatesLat. (o)-24.867Long. (o)152.351Alt. (m)Depth (m)0 to .03
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001346Metagenome / Metatranscriptome718Y
F006338Metagenome / Metatranscriptome375Y

Sequences

Protein IDFamilyRBSSequence
DRAFT_00361250F001346AGGMSKNTAELWKKSNLRVKRPDPWHRANALSKTAADPGQDGEDAEKKSQLCLYLVRRSVAQPSVEAS
DRAFT_00361260F006338N/AVVLENGMLGGPATRPKTPLAVANSVGKLAAAEMWRQMPARERELGELPSPILKKKQN

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