NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold draft_c913266

Scaffold draft_c913266


Overview

Basic Information
Taxon OID2209111016 Open in IMG/M
Scaffold IDdraft_c913266 Open in IMG/M
Source Dataset NameThermophilic bioreactor microbial communities at WVSU, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterWest Virginia State University
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)529
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Grass → Composting → Bioreactor → Solid Waste From Bioreactor → Microbial Communities From Bioreactor At West Virginia State University,Usa And At Bielefeld, Germany

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048731Metagenome / Metatranscriptome147Y
F103107Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
draft_9132661F048731AGGAGGMIEKALRFALIISEEPLEIKKHVEYYMSTLGYDRRYKFKWKAVSGNYGQTLSGICEYAGQRYYFSKHSDELHLEKI
draft_9132662F103107N/AARSCIGNDEKTGGYIELAGTRWDGNLGDEELMARALKEAEEAGLDLSYGKILIEEEK

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