NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2225733918

Scaffold 2225733918


Overview

Basic Information
Taxon OID2222084010 Open in IMG/M
Scaffold ID2225733918 Open in IMG/M
Source Dataset NameCoastal lagoon microbial communities from Mar Menor, Spain - Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity Miguel Hernandez
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8400
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (95.65%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location
Location NameMar Menor, Spain
CoordinatesLat. (o)37.72955Long. (o)-0.7741Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F002858Metagenome / Metatranscriptome525Y
F023856Metagenome / Metatranscriptome208Y
F056585Metagenome137N
F071124Metagenome / Metatranscriptome122N
F073499Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
2225114560F073499N/AMTTEQELEQWIRDNPWKANVIYPAGGIGFMMFIMYTCMQIIDSFLTGTIV
2225114561F001655GAGGMKQPDNAHTKMFGNDGPIGNDAEIIVYYEQHGPAEPVLRIPFWYCKDELGLYENFEASVHRTAKALKESYTYWPEGYVHVQTIINDEYVNMI
2225114562F002858GGAGMAIDEKSIYLVDGGDYQVYCFGYTQARTVTNDIMRRDPWGGIPFVYQQDQLEVSFDDKGNVVMPRVVLDRILFLASDELPEGEG
2225114565F023856AGGAGMRCKACNRILEETELTKKDTHGDFLDLCGNCLSASAFSGLDSDTMEYYQYEIFTEDEKYDTLY
2225114566F071124GAGGMTYEEYELGYYTGDSEDSSEPPEDPETHAMLEHLVEFETEMYRLKCRRRLKICTRRQLERLLVELHGEEWRDAL
2225114568F056585GGAGMPRETWEMWADEYQEYYXDXTPVYPDDIEEWKKEEQRVIDEVIQAMKRLRQ
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