NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2225738118

Scaffold 2225738118


Overview

Basic Information
Taxon OID2222084010 Open in IMG/M
Scaffold ID2225738118 Open in IMG/M
Source Dataset NameCoastal lagoon microbial communities from Mar Menor, Spain - Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity Miguel Hernandez
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1109
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location
Location NameMar Menor, Spain
CoordinatesLat. (o)37.72955Long. (o)-0.7741Alt. (m)Depth (m)4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037491Metagenome168Y
F062713Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
2225125129F062713N/AQFLSGREDRERLGLVPAFFTQGVIAARFQGGGINTVTDEMNDMYGMGGFDDHWSGEIDDDGVYHAPDDEPLEPFATVSFGGWTMWAYPYSIFGIKDSVGHQRVGRXXXXXRLIKKGL
2225125132F037491AGGAGGMHFTENRVAQYFIDAVLSDPDKSITVCGEGEYADVKKSREHMTVLDNMGECDFDDVGVWSDDLEEYVAWFQFVYGNVTSTSEAMEVIGDYSANEYADRIIKKVEWCAE
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