NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2225744388

Scaffold 2225744388


Overview

Basic Information
Taxon OID2222084010 Open in IMG/M
Scaffold ID2225744388 Open in IMG/M
Source Dataset NameCoastal lagoon microbial communities from Mar Menor, Spain - Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity Miguel Hernandez
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8266
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (95.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location
Location NameMar Menor, Spain
CoordinatesLat. (o)37.72955Long. (o)-0.7741Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F002858Metagenome / Metatranscriptome525Y
F024320Metagenome / Metatranscriptome206Y
F030293Metagenome / Metatranscriptome186N

Sequences

Protein IDFamilyRBSSequence
2225137910F030293AGGAGMIVEMLDDRVSIESLGLIPHFFERALYIEGQPIQSVADKMDTLYHYGGFVYPFEGTIDSNGRYISYNDFGEDEPLDPIARIDKLGFTLWVYPYAIVGLMDDKGNQKIARFD
2225137914F024320GGAGGMTFEEYERGYYGEDSEDSSEPPEDPETHAMLEHLVEFETEMYRLKCRRRLKICTRRQLERLLIELHGEYWKDAL
2225137916F002858AGGAGMTIDEKSIYEVTGGDYSIYCFGYTQARTVTNDIMKADPWGGIPFVIRKDLEVSLDDRGNVVMPRVVLDKILFLASDELPEGEG
2225137917F001655GAGGMKQPDNAHTKMFGNDGPIGNDAEIIVYYEQHGPAEPVLRIPFWYCKDELGLYEHFEQSVHRTAKALKESYTYWPEGYVHVQTIINDEYVNMV
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