NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ICCgaii200_c0685343

Scaffold ICCgaii200_c0685343


Overview

Basic Information
Taxon OID2228664021 Open in IMG/M
Scaffold IDICCgaii200_c0685343 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)864
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m).1016
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004385Metagenome / Metatranscriptome440Y
F004491Metagenome / Metatranscriptome436Y

Sequences

Protein IDFamilyRBSSequence
ICCgaii200_06853431F004385GAGGMLQTAKPFLFASFLLCVPFTSAIAAEREDVRKVINLVTSVKMPYPESLSRNRSRTERVWLERDGLTVGCIRMEERRWCYEHIAPNGNRAEMLRIRNEPSRGV
ICCgaii200_06853432F004491N/ARTELVKLDTNGATVACLRLDDKVRWCYEHIAPVGARAEMLRITNEPVAGMLVGQLFNYVDDFDLDGSVDIGSTTRLDGQPHAPIGSVTQFFFRGINRGEQFRGDYQKLYDEGIQIALKYLGE
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