NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold none_p050378

Scaffold none_p050378


Overview

Basic Information
Taxon OID2236876005 Open in IMG/M
Scaffold IDnone_p050378 Open in IMG/M
Source Dataset NameEstuarine microbial communities from Columbia River, sample from South Channel ETM site, GS313-3LG-ETM-15m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of South Carolina
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)511
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameColumbia River estuary, South channel near Astoria
CoordinatesLat. (o)46.249Long. (o)-123.986Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043385Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
none_0503781F043385N/AINKDNMIIRKVSGLWIVERQHSGQIVFSHKNRMTCYEWMFNGISYA
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