NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold none_p182323

Scaffold none_p182323


Overview

Basic Information
Taxon OID2236876006 Open in IMG/M
Scaffold IDnone_p182323 Open in IMG/M
Source Dataset NameMarine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-0p8-Deep1200
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of South Carolina
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)510
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameCape Meares
CoordinatesLat. (o)45.483Long. (o)-124.918Alt. (m)Depth (m)1200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037217Metagenome / Metatranscriptome168N

Sequences

Protein IDFamilyRBSSequence
none_1823231F037217N/ATIYLNVYKTMDFFGRVVVRFSDATSKLISNYIAKHQLKNGEYLFGTSGKDGKMSATVAAWLVEAGVKDGKVQGQTKTPGAINLLRHAYISQKIKEEDVIKLSETMKHSPLATELYARKIQPLLVENMIKIDERKLVYEEPEMIQTRYEGTRRRENVKEEAKKKAKKGRV
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