NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold none_p315957

Scaffold none_p315957


Overview

Basic Information
Taxon OID2236876008 Open in IMG/M
Scaffold IDnone_p315957 Open in IMG/M
Source Dataset NameMarine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-3LG-Deep1200
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of South Carolina
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)550
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameCape Meares
CoordinatesLat. (o)45.483Long. (o)-124.918Alt. (m)Depth (m)1200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016594Metagenome246Y
F076492Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
none_3159571F076492N/AECFDRGDKMRVELATYNEEQNAWFLNDGSGTWQGFICG
none_3159572F016594N/AMWLCSGVANDCKRIVVPYTTFDSYKDCSLYGYQHTVDILTKMPEEEIEKWQIHTRFSCKAEQTI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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