NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PC6_p0630333

Scaffold PC6_p0630333


Overview

Basic Information
Taxon OID2236876023 Open in IMG/M
Scaffold IDPC6_p0630333 Open in IMG/M
Source Dataset NameSaline water concentrator pond microbial communities from Bras del Port saltern, Spain - PC6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGATC-Biotech AG, Konstanz, Germany
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)935
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water Concentrator Pond → Saline Water Concentrator Pond Microbial Communities From Bras Del Port Saltern, Santa Pola, Spain

Source Dataset Sampling Location
Location NamePunta Cormorant, Spain
CoordinatesLat. (o)38.11Long. (o)-0.36Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028966Metagenome190N
F044811Metagenome154N

Sequences

Protein IDFamilyRBSSequence
PC6_06303332F028966AGGMSAYAFVNYVRFKTQADAYTGTPYQNFSINEQRVYDGITYSFAPFAISSGGGARGGDRSSASLVAGTDALSVNLFAEAVQNRYMLEIKTVSLDPLTFADEALVASEIWRVASYDMDSTRVVLKLTSPLDAVKAQVPRRTLSTALVGALPTSGALVVS
PC6_06303333F044811GGTGGMWRHWIGLPHKFRADPRNGHAADCLIMTWNVLEDAGVPHPPFDPIWLDLAESGKHRLLARAYERLTIPLDAPEEYAVTLFSTERTIGIGVVVDGGLLHVHHRRGVQWMPLDRCKPLEFRKFT
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