NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ICChiseqgaiiDRAFT_c0729784

Scaffold ICChiseqgaiiDRAFT_c0729784


Overview

Basic Information
Taxon OID3300000033 Open in IMG/M
Scaffold IDICChiseqgaiiDRAFT_c0729784 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2822
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m).1016
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042965Metagenome / Metatranscriptome157Y
F104948Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
ICChiseqgaiiDRAFT_07297842F104948AGGMSTSLLLSIIGLRFTVVFCSAFLVPIPALEFVQSALVQHQIVFLGDIHPLAEPKLLVAELIREQRVGQGIDLLALEVGADQQEWVDRYLKSQPEDTTILLDHPRTLRAHWGVSAEYLGIYRAVYQWNRIHPAHPMHVLAADLLGWPIAPTTLHMATGGFVNRDIWMAAAFRKALEPHPDWRVLIFMGGYHGLKEVGGQVAMGRVHDRFDHWFAGYLLEAGLKVYTILADARQDSAHPATRVFARLARDSAENFIEALDSTTDDIKEPLYDVDQDGFQLEFWPARFPLRRAADAMLVLNRSTPITILH*
ICChiseqgaiiDRAFT_07297843F042965GGAGGMRRGFLLLGAIVCGACSRERAGNASASAYTSDADSSAKEDGVAGTNSGSELEAPRLIPAIQNQLNLMANGTQPPSTTNLTAYKNMAGDLINSMVADLYRAGYADSGSFKTLADSVLNDLGGGAGTTARIDKAKLPQHVDRMQRLIRSYQQTMKEAAEQQ*
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