NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ARcpr5oldR_c000668

Scaffold ARcpr5oldR_c000668


Overview

Basic Information
Taxon OID3300000041 Open in IMG/M
Scaffold IDARcpr5oldR_c000668 Open in IMG/M
Source Dataset NameArabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4066
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUSA: Bethesda, Maryland
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085883Metagenome111N

Sequences

Protein IDFamilyRBSSequence
ARcpr5oldR_0006684F085883AGGAMEHRYHYIVRLDKCFFRGDIIMDKIRILILVIGIIVIIGFSIYSFKGTTPTSQPEGTQIKPIGQATITPSPDTYLNHSLVNTSTSNLKSYESVPAFHYISFSTNLMALAGENASNAASSSMVMNIFANKDLPENFYSISFPQATIVTHGKNPGSFVAKFQNLFSSIDLQDIPDDTNVNLYMLTVAKPNLNMLPDYKELSSNQFKIDNNRAYDIKYTWSNSSEKLETLKTFIEGKDQAAVVTFSGPVQDYIKNNSTLNSILHSFKWLGQ*
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Institute for Fundamental Biomedical Research
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