Scaffold ARcpr5yngRDRAFT_c004763

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ARcpr5yngRDRAFT_c004763

Scaffold ARcpr5yngRDRAFT_c004763

Overview

Basic Information
Taxon OID	3300000043 Open in IMG/M
Scaffold ID	ARcpr5yngRDRAFT_c004763 Open in IMG/M
Source Dataset Name	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 young rhizosphere
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1270
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location Name	University of North Carolina, USA
Coordinates	Lat. (^o)	35.9	Long. (^o)	-79.05	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051582	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
ARcpr5yngRDRAFT_0047633	F051582	AGG	VKRIALKDNVTVDSVDLSVFARSVEFSSEHDRVDVSGFSPTGTNEYLAGPTEQQVTVEFYGSYGAGEVHATLYPVHRDRDIVPFAWRPDQTAIVSATNPELRGNVQIYSYGPGATRGEVEAFQVTFNAADEDGLQFYDAPAA*

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