NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ARSoilOldRDRAFT_c012313

Scaffold ARSoilOldRDRAFT_c012313


Overview

Basic Information
Taxon OID3300000044 Open in IMG/M
Scaffold IDARSoilOldRDRAFT_c012313 Open in IMG/M
Source Dataset NameArabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis soil old
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)720
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUniversity of North Carolina, USA
CoordinatesLat. (o)35.9Long. (o)-79.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058186Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
ARSoilOldRDRAFT_0123131F058186GAGGMKTLGSVVGLIVLSVTLLSVLDSGAEEKSPRKEESSFSAAHCHGSIAXTEWTLADGNSPTPACVVGNDVRKGVLNFDADEVQGAIVPFTLPGQFRGKLNVTITWQAASTIGSVGWCVELVTATDLKREGGASLRRTAHNCASDQAKKSTKHLNTSLVINVTETAPAANNDVWHIRVSRDANSSVVLDDMPGDARLIGVVIETQEASRQAL*
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