Scaffold Botbay15_c033980

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Botbay15_c033980

Scaffold Botbay15_c033980

Overview

Basic Information
Taxon OID	3300000051 Open in IMG/M
Scaffold ID	Botbay15_c033980 Open in IMG/M
Source Dataset Name	Porifera Cymbastela concentrica microbial communities from Botany Bay, Australia - sample 15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of New South Wales
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	810
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Porifera Cymbastela Concentrica → Porifera Cymbastela Concentrica Microbial Communities From Botany Bay Near Bare Island, Sydney, Australia

Source Dataset Sampling Location
Location Name	Botany Bay, Sydney, Australia
Coordinates	Lat. (^o)	-33.990833	Long. (^o)	151.23195	Alt. (m)		Depth (m)	7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021777	Metagenome / Metatranscriptome	217	N

Sequences

Protein ID	Family	RBS	Sequence
Botbay15_0339803	F021777	GAGG	MKKLILLFLIIPLISCSEHQTNSWGSYATNKESKKQEFWFISYKSRDECIADMHWQFEGEEDDSKQRISNLHTKPYGCHFMSNNKWLSMYYFLIYK

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