Scaffold LCrCPGB2aDRAFT_c003879

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LCrCPGB2aDRAFT_c003879

Scaffold LCrCPGB2aDRAFT_c003879

Overview

Basic Information
Taxon OID	3300000095 Open in IMG/M
Scaffold ID	LCrCPGB2aDRAFT_c003879 Open in IMG/M
Source Dataset Name	Soil microbial communities from Colorado Plateau, Green Butte sample - Light Crust, Colorado Plateau, Green Butte 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	2681
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029653	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
LCrCPGB2aDRAFT_0038792	F029653	GGCGG	MIIPDRTGVILGYRVWRVIPGKWVPPSESLYAQTCHRSWSLAGPTSAYCPPRVQGDPGKPLVRRSPCESAPSFGCTCGLYARYDPIQETHRLPYVVGSVLAWGRVIHHEERSFFRAEKALPVAFVRPRGGGGAFPELSKEKLLRIADLLGAGVVEDAEELREYSEEEAKNW*

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