Scaffold DelMOSum2010

Basic Information
Taxon OID	3300000101 Open in IMG/M
Scaffold ID	DelMOSum2010_c10000266 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000101 Open in IMG/M

Scaffold ID

DelMOSum2010_c10000266 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	46514
Total Scaffold Genes	75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (29.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

46514

Total Scaffold Genes

75 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (29.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.84917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.84917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005287	Metagenome / Metatranscriptome	406	Y
F007770	Metagenome	345	Y
F016956	Metagenome / Metatranscriptome	243	Y
F023615	Metagenome / Metatranscriptome	209	Y
F025258	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000026649	F005287	N/A	MKSSNIVYSEHGVDECFEYKNGSGRVPDGLAVGFVKDFPEGILKDLFLFDDIIYSNYDHDYWDNLELENDVDRLILP*
DelMOSum2010_1000026670	F023615	N/A	MNRFELEDSMSNLHQISEDIETIIYAIGDSPIKHTEDQLLNMLIGMKQLHDTRYQKMWDTFEQLIQNGTISDKNTEGL*
DelMOSum2010_1000026671	F016956	AGAAGG	MIDAIKTWQAPKKAQLAIIDLAITHIKKVEGNPDVKTEGDNFDYWNSYELEDGTYIDYNIHCGDDWCVLKQDGSGEYEYTDPSTWSWDVACYAVDPPNEEREYHQIDTDREQYLFSYNKSYGNREVEFENDSL*
DelMOSum2010_1000026673	F007770	AGTAG	MSGEGHTTSFKRIAQTTKSNEQLLEEFKRLVYSSKKVMSHMKWYGKEHSVELVEHGDEEQPKWRQESVAIKDTFEFYISTYESWGKDSNYYECHKTEGSFVSLAMKFAEDNNLMYFPDGFPAEWIEQEIIDGEKNWNHFNVKSDDKNIDKICDVWYHYGIMKLQAFDEKVESQLWQDTKAEIKQLMEHKYAK*
DelMOSum2010_100002668	F025258	N/A	MSEYKPKPFTKEISEQMKLDIGTPFDEKRTLCNVLKLAYRCSKEESYNLEAVRALLLEGFWMGQRMSVKLSSDKKNELSDEQLKQQEDEDPFSVDWSNLDGRNVARGNWD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOSum2010_c10000266

Overview

Ecosystem & Geography

Associated Families

Sequences