NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold DelMOSum2010_c10001623

Scaffold DelMOSum2010_c10001623


Overview

Basic Information
Taxon OID3300000101 Open in IMG/M
Scaffold IDDelMOSum2010_c10001623 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)17969
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (46.15%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026572Metagenome / Metatranscriptome197N
F027348Metagenome195Y
F033410Metagenome / Metatranscriptome177N
F060821Metagenome132N

Sequences

Protein IDFamilyRBSSequence
DelMOSum2010_1000162311F033410GGAMANYPTATYAQLKSRFKALTGLDSLQASESSFLRDLVNRAARTAHERYPWPQFTVMGESVAVVTSDANRLRIYGTSNKLANNANVVFRIHKSDPTSSRYPDEYTYLTELDSGGFPSVKIIEPTVLNGVNVFITYRKDLRSEINSGSATSGYYGDDSGDNSEVPNVWFDYMVQSSYSGFLKGDGQNEKAQLESQNAEAILAQEIDVVREQSRQYRNDILQYRAPSQFRRHNIQAGGQPVNPGIANVQ*
DelMOSum2010_100016232F026572GGAMKRDQVVILRKTGLSWPKVSQSVGIPRSSCQKIWAEDSNGDMELPKPPAKQIEKARVLKLVPNPRLMLIHFDDREGVARCVKRPEQNHPVKSEIYVKRVEGDDDLYRIA*
DelMOSum2010_1000162321F027348N/AMRNLEILKDKFLDMSKKGKMITIFAGLVVGIIIIDWLF*
DelMOSum2010_1000162322F060821N/AMDRTALAGFGGSLASVSGSLHEIVGLIAGGMTIIYMAVKIYQEVKKK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.