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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300000101 Open in IMG/M |
| Scaffold ID | DelMOSum2010_c10002112 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15476 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (25.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
| Coordinates | Lat. (o) | 38.84917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F052885 | Metagenome / Metatranscriptome | 142 | N |
| F056904 | Metagenome / Metatranscriptome | 137 | N |
| F061979 | Metagenome / Metatranscriptome | 131 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| DelMOSum2010_1000211213 | F061979 | GAG | LERIFKKEQFDGMIINPFDLSDEDLDLQVRSGVLFEALGPEIWVYPNLYRPYLVRYILYMYDKGSELRRYFPDIAERKKVCAELSGLDLTKKKHQDKAEEFYILAHKSSRLSMISFIKHQNNVIYGLYWSNIEHLWKLISDVSKQFKEFSNDKAYLEGQKIKSQMLELAEETLGRIKKHELELFQGDDLAKDLTTKTRQGTFPEDVATIGNVY* |
| DelMOSum2010_1000211219 | F052885 | N/A | MKATDYNNYPEWMKKPFTKMVIYTYNDIRKDPDNPGRYIVPSHYQFKLTDQIIVTDEDGTNQRPIYIAYSKGASADGSIIFGQDLFFSSDNFGRIVLDPKRASDHDKYMFMEYSNMNASNPNRDDSVPVVWKKEDLEVKAKVSRVDRKARKEAMLEALQLSPHMVDVLVSVLGSRSDKDKSEEEKRDMIEDIAEKNPSKFLAAVKSNLSKIIQTIKEAKEIGIIRNDIKKQQFVFMPEEDLILSTKGFDKKKIYELFAKFLLENPKVLKTIESKVLMEKDLV* |
| DelMOSum2010_100021128 | F056904 | N/A | VKSNYVSPYNHLAVKVNRLFEDEIKSTSLDLKIRTDLRPTHHTKIHGEVIGLPRKYRDDKLPDGDVLWYSEGIDDFYKIGDKIYFHYNCVLDKSKMIEDKVFFIPARRIFLKVQCDNIIMAPGFSLGEKIYEDNVVEIELDGKKTMAEVSPVTQIIIDMFPKPIPKQLTVKHSNVHDKLETRVLMLDDSNMELEVEGQTYYLIEDRDIIGTFK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |