Scaffold DelMOSum2010

Basic Information
Taxon OID	3300000101 Open in IMG/M
Scaffold ID	DelMOSum2010_c10002137 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000101 Open in IMG/M

Scaffold ID

DelMOSum2010_c10002137 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	15395
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (26.67%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

15395

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (26.67%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.84917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.84917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009493	Metagenome	317	N
F030897	Metagenome / Metatranscriptome	184	N
F044500	Metagenome	154	N
F047307	Metagenome / Metatranscriptome	150	Y
F047926	Metagenome / Metatranscriptome	149	N
F084220	Metagenome / Metatranscriptome	112	N
F094426	Metagenome / Metatranscriptome	106	N
F100722	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000213710	F030897	N/A	MQVEAGVLHLEHKGIEVEVSVIWDLEQGGPLYAMKDGKIFMSLSPEELKALYVLYRDIELKGTVEDA*
DelMOSum2010_1000213717	F094426	N/A	MYLTNYTADRVRLAYTFAEHLRHNWRELSDSKRDALLKEITDLTNVQLIEQQYESRIDKIQSDGTYDKALRRAKLGL*
DelMOSum2010_1000213721	F084220	GAG	MDYLSRELEEYQYRIDTTCEKCGESTDPDYYDCKCSDEEE*
DelMOSum2010_1000213722	F009493	N/A	MRKNKEIVLTLGKVPSLNSFYAGSHWTKRKKAKDAALETIKEQLGHNKGAPFNSFRVTAYVRYRYDLDNSIIAVKFTSDALKTLGWIKDDSPKYFRHLLLVWSEQIPRDEAQITIELSDEHP*
DelMOSum2010_1000213725	F047926	N/A	MYIEIAKNTWAYAKDEKDAERIRAKYKDYKKKQGDLTSRHFIVNYIEETNFIK*
DelMOSum2010_100021374	F047307	N/A	MRGNLYISVPAADSSKAIPASITRYDWVENTYNEEGEVESSNTIHPTWSQYGERYAPQYGAPVSVTVGTKSFVVYELTASWKDSEVSALVNLGSGKAEPNYTVMTAEEARAFIAANQEAEL*
DelMOSum2010_100021375	F044500	AGGCGG	MEQLKLKAQEIKARLKARFKALRDIWQYSDSQPTEITLAVALVFLYPTATYLELGYSPIMDVLGPMAGIYQLYCVSGKCLSCRVRASFITFSFYLLATVMYLYCGMLFSSPTYLGWLVLCFSSFGSLKRIKKEELHRKNG*
DelMOSum2010_100021376	F100722	GAG	MDNSTQIVLAVVTLLGSAGIWKYAEARLRVKADLKKEEQSTSDTVLYRDDLKSRVEEMDKALKEANKELLALTQKVAKLETENTFLRREIDILKSK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOSum2010_c10002137

Overview

Ecosystem & Geography

Associated Families

Sequences