NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSum2010_c10004876

Scaffold DelMOSum2010_c10004876


Overview

Basic Information
Taxon OID3300000101 Open in IMG/M
Scaffold IDDelMOSum2010_c10004876 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)9574
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (51.61%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000589Metagenome1006Y
F003230Metagenome499Y
F006446Metagenome / Metatranscriptome373N
F035797Metagenome171Y
F101497Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
DelMOSum2010_1000487618F000589GGAGMPHSKHIKGDRAELIAAEYFIKLGYSVHRNMSQHGPIDLVLIDEDGMGDVILVDVKAISLRTKNGYKVNRSQTKKQKELDVQLIFVDLDTREVLDIMPTKRDKKVNKVDMTNVVPFERKNNV*
DelMOSum2010_1000487622F101497N/AMSERDWLIFRIKDLILKCRSKGKFLLAIKLKNKLKEIK*
DelMOSum2010_1000487625F035797AGGMTMYMYGKRNKKKNKNYYRNNVILSLSSISVGIYDFRVDTRVDTLCLR*
DelMOSum2010_1000487628F003230N/AMKDKRTYTHHKEHGEDISHENEVVIDFVEAKTDDIVNKLRNNIRDLLSMNTQYKTELADQIVKINKLEQEVKDLKQERSDYYNVS*
DelMOSum2010_1000487629F006446N/AMLVRDLQQILGQFTDKFNKGMGKVEGKGNAIMYAKVYVDMGNNRLSEIQKIEAHENTLIGATEGIRVVFKLAPQNKSKLIL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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