Scaffold DelMOSum2010

Basic Information
Taxon OID	3300000101 Open in IMG/M
Scaffold ID	DelMOSum2010_c10011253 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000101 Open in IMG/M

Scaffold ID

DelMOSum2010_c10011253 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	5725
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5725

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.84917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.84917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y
F089429	Metagenome	109	N
F092873	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100112531	F089429	N/A	DINIYSIFSRTYKKKMFPFMDFGEIGILKKVKTIKQVSNVYQFPIHKYYNQKRRVK*
DelMOSum2010_1001125310	F092873	N/A	MNNILNKKIIEIATKSGYKSEFVESYMIKKELTAKGFTFRRFALDQLLKKNSKKISDFIKDTYLPKEQKNKFAQISKILNPKKDAPKYYTENDLAFDLSHWFNSFSNGDVLVSPEYFVGNNVEISVVGSLYGNGQVGLHKGKEITKINIHPKYANCHAIESQIGSSRGYMRLFAPSKSISHAANNRFGFAQDKKSKIIWCGYIEPQSNGKFNILDKSYSTGKTYGTQVENISLSWSAEIKAEYYPTFYNN*
DelMOSum2010_100112533	F004629	AGGAGG	MIPTRITVDELDNMFQTATYVERYLPSPSMKNKRTEMFSLIDRLYGIGKDKDTYKDDDKPRLRIRLNSGQLQTYEFCILLLVKATEPQRDIIQLRNFPYRKSFRELRKFFLPSSHEKVRSDYYKALQELISLYNKHGYKYICK*
DelMOSum2010_100112534	F011253	AGG	MNNRKAEIDKIIKDMVKNKSLPYANAITKIKKDRKGYYQQKDIKLKSKSLSTDRFQQYLKTIQEEDDTN*
DelMOSum2010_100112537	F004990	GGA	MYGDPKKPCCVCKKGADLNERGKRYCADHYALYILGKSMSQIEKVLKKET*
DelMOSum2010_100112538	F008915	GAGG	MENNSITLDLYEMQSAAHLGILRCLESKKNKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLGIKFEYHCNVGGVPDLIFKDLKLQVRTQLPKNNNSLIIRPKAKPGELYILVIDEAPNFKILGFVNSTFVLGQEQWKTTFGLDRPFCYSIPPDKLTPIELLKNGTWN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOSum2010_c10011253

Overview

Ecosystem & Geography

Associated Families

Sequences