NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSum2010_c10014419

Scaffold DelMOSum2010_c10014419


Overview

Basic Information
Taxon OID3300000101 Open in IMG/M
Scaffold IDDelMOSum2010_c10014419 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4880
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008425Metagenome / Metatranscriptome333Y
F024797Metagenome / Metatranscriptome204Y
F032332Metagenome180Y
F051263Metagenome / Metatranscriptome144Y
F064641Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
DelMOSum2010_1001441911F051263N/AMNISNFESFGLNEAEKHEFNPNETAERLKRREQQNIDRFRAAQEREDAFGITYYKYRIAIDKIDLQKLKLQTQIHQLKQKYKK*
DelMOSum2010_1001441912F064641N/AMDSKQTTNSRKDQNDIRHFAGSVKQFKDMFDDLADGKDTNAYDSPVRQGYDIHPTREEDIDSPHWDKDHKDEKTQNENHIPTFNTFLNEARTTDGLSKD
DelMOSum2010_100144195F032332N/AMEINPGNGFSDDFIRSLLLTLEQTDFNEFMNLSYHVLMQSPASVLKRKDSINAKVESINGLIKYFEEVEEYEKCTNLQKLKTMLFLNTPNDES*
DelMOSum2010_100144198F008425N/AMPTKDITYKQFIAHMDKGNKVYMKKPRSWQKVWFWWESKKDKWFLNKAFDQRVDGRVEPEPSSWITAKHMKSHMEYMNRQGYKYHIDE*
DelMOSum2010_100144199F024797N/AMSEFFRTQMGRKLIDGDIPKLVHVLERIAIQMEKKNKLEEKKFILEEKIQKLSIRESRNK
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