Scaffold DelMOSum2010

Basic Information
Taxon OID	3300000101 Open in IMG/M
Scaffold ID	DelMOSum2010_c10014437 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000101 Open in IMG/M

Scaffold ID

DelMOSum2010_c10014437 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	4877
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (46.15%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

4877

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (46.15%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.84917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.84917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020913	Metagenome / Metatranscriptome	221	N
F021778	Metagenome / Metatranscriptome	217	N
F023859	Metagenome / Metatranscriptome	208	N
F025038	Metagenome / Metatranscriptome	203	N
F044529	Metagenome / Metatranscriptome	154	N
F048992	Metagenome	147	N
F054022	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1001443710	F025038	N/A	MMVGTIGIVLNIVGADMPEVNKNNRRLFVEDEYDLYDVRKARPFWNDVCEVNGWDIVKDEEDFKEDYVCQINNELYFMELQIVGYWHNFDLSKISNVRISASKVKLLKEKGNGGLIFLNCVPNRFFAINVNQVTPEMKKDSVREQFYEIPLKTINPREVNVLDTNYCDCLENHLKIMQRSDGRMAFAQKDYNIRGKNGICC*
DelMOSum2010_1001443711	F048992	GAGG	MEYAADDINYGYMSIIMHINSEYTLIDKIENIREIDGTIEHPIFGKNKGGVSFSLFLRGFYTVFEAVLNYGDRFDVYVVNESGNTTMIDEDLDHLISLLHILYVNKKAEEDDLLNRALNPHTYRKAAKKMFYNEDPPF*
DelMOSum2010_1001443712	F054022	N/A	MKIPHFKKGLKVQFVEAATDFIDPPTQDILWRYGKILFQVKSKHGAISYFIEENKKKVKISRYLIFPVN*
DelMOSum2010_100144372	F044529	N/A	MLIQEIIYLGFVVYGVISLLMTMAYVSIKLDDKRLREKKRDLYDVTDFESRLKEGEILNWCNLFTDTHHFDAPADDGNFVCLKCWTYEGYEMEEV*
DelMOSum2010_100144373	F021778	GGAGG	MGMPKFLEDYVTVDTLISKMNNEYPECRLVAEMVDNGEDWVIFKSSFYENKEDTEPKATGYARQTKADHNSWFEMASTKANGRCLRVVFSESTTAEEMIGIAPSKEAAPKKTIEKELEKAGIEYEDVSVSQTHIINNIKSFAMDVANDNTANAANWYAQALGELDIPEAQLNIDNMKSVKNKLQDIATNLQKEGA*
DelMOSum2010_100144374	F020913	GAGG	MLGIFGRNKPLSVLEDLQLDYNPSEFRKVQYVLELEGFICSLDPEFNKNGNLRKAVNRLRTQYNALIYTEICNCSNKQYAKLKKNGSPYMHKAYIKDWAL*
DelMOSum2010_100144376	F023859	GGTGG	MKKVIVKFIGVKKYLVTDNADPQKIKDMFRKDLELLPPVWANNIEAVMYAKDEPEAEEE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOSum2010_c10014437

Overview

Ecosystem & Geography

Associated Families

Sequences