Basic Information | |
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Taxon OID | 3300000101 Open in IMG/M |
Scaffold ID | DelMOSum2010_c10033420 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2791 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (84.62%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
Source Dataset Sampling Location | ||||||||
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Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
Coordinates | Lat. (o) | 38.84917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008925 | Metagenome | 326 | Y |
F060436 | Metagenome | 133 | N |
F064207 | Metagenome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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DelMOSum2010_1003342011 | F060436 | AGGAG | MRYNEMNIQHFANLVQEINVSKYTQEEYREIVEEIYMTIFRHNTDGEYVIETMPNEEGNWKVYKPTQTKEEALRLIKERNKHGGN* |
DelMOSum2010_100334202 | F008925 | AGGAG | MKTTKPTIDAVTLNLINKLKQIDDTMNEGAWEYIHLGDILRLQDAFHKAIRHYDLKKEGGIHDYGADKGKYQQFYHSDYVCHTDPEAFDPSKVEEEDDE* |
DelMOSum2010_100334209 | F064207 | GGAGG | MQIEKLTDKEQLIVDFLKDNNVDISEVIDVIIKANGFVGVGLVTLEEHIVEAIKKHHKYESLDKIMNG* |
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