NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSum2010_c10035453

Scaffold DelMOSum2010_c10035453


Overview

Basic Information
Taxon OID3300000101 Open in IMG/M
Scaffold IDDelMOSum2010_c10035453 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2681
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004162Metagenome450Y
F007537Metagenome / Metatranscriptome349Y
F017556Metagenome / Metatranscriptome240Y
F089527Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
DelMOSum2010_100354532F007537N/AMKKLLYFLVVGVLFTSCQKDEFEIPTNYQFEMTGRTNQDINGYYHVSINSSEDQQSLHRFGAKVTNVDKFNLPTKVIWRCDAFWYTPDTLGHTYIEIGNVPTGESVWSWENFAVTGYGGMTVPIVNGTSHADPQVDSAFCMMAPIGAMVGDTVAIYGQAWFEEGDVIKYDNINVIFE*
DelMOSum2010_100354533F017556N/AMSYAKFKEGQVASFPSACTVGNRARKGGTITGVEKMYELKDENKRFYANGECKGDLTTSKELSNGEFKGYAYRCKTIQPKGYVAEIVMVEEFKLKLTTEKKVLNSYTIYA*
DelMOSum2010_100354534F089527N/AMANMNKKFKPGQGKTQQQYEDSARFAWYGVVGMVILLILFSLLSSCTTTKKCCDKEHVITEWDGDRQINWYSSTEEK*
DelMOSum2010_100354536F004162N/AMGKTQKVAILLGEKQKIEKEIEELQRSCQHSTKSIRNVRERLDSTTMVIRYVCDTCLLPIGYPNAKEIENFLNQ*
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